Function reference • GeneDiscoveR

All functions
`GeneDiscoveR()`	Create a GeneDiscoveR object
`calculate_median_statistics()`	Calculate statistics for selected files
`calculate_overall_statistics()`	Calculate statistics and return metrics dataframe
`clean_phenotypes()`	Clean phenotypes
`gene_identification_by_phenotype()`	Gene Identification by Phenotype
`get_complete_table()`	Get complete table from GeneDiscoveR object
`get_filtered_genes_table()`	Get Filtered Genes Table
`get_medians_statistics()`	Get the median statistics from a GeneDiscoveR object
`get_names_identification()`	Get the names of the identification objects in a GeneDiscoveR object
`get_overall_statistics()`	Get overall statistics from GeneDiscoveR object
`map_annotation()`	Map gene annotation
`obtain_OG_from_gene()`	Obtain OG from Gene
`plot_OGs_HOGs_per_inflation()`	Plot OGs and HOGs per inflation
`plot_allSpeciesOGs_sOGs_per_inflation()`	Plot all species OGs and sOGs per inflation
`plot_genediscover_detector_volcano()`	Plot Gene Detector Volcano
`plot_genediscover_volcano()`	Plot GeneDiscoveR Volcano
`run_genediscover_web_app()`	Run the GeneDiscover web application
`select_filtered_gene_index()`	Selects the index of a filtered gene based on specified criteria.
`select_genes_by_phenotype()`	Select genes by phenotype
`select_species_by_phenotype()`	Select species by phenotype
`set_annotation_file()`	Set the annotation file for a GeneDiscoveR object
`set_run_active()`	Set the active run for GeneDiscoveR

Reference