This function retrieves the complete table from a GeneDiscoveR object. If you perform a gene identification, the complete table will be the table with the results of the gene identification.
get_complete_table(GeneDiscoveRobject = NULL)A GeneDiscoveR object.
The complete table from the GeneDiscoveR object.
N0sDir <- system.file("extdata", "N0-1dot3-6", package = "GeneDiscoveR")
overallsDir <- system.file("extdata", "Comparatives-1dot3-6", package = "GeneDiscoveR")
dataFile <- system.file("extdata", "annotatedCDSs.tsv", package = "GeneDiscoveR")
minInflation <- 1.3
maxInflation <- 6
stepInflation <- 0.1
GeneDiscoveRobject <- GeneDiscoveR(overallsDir = overallsDir, N0sDir = N0sDir, dataFile = dataFile, minInflation = minInflation, maxInflation = maxInflation, stepInflation = stepInflation)
# Set active run
GeneDiscoveRobject <- set_run_active(GeneDiscoveRobject, InflationValue = 1.8)
#> -----------From OrthoFinder-----------
#> The process has been completed successfully
# Get complete table
table <- get_complete_table(GeneDiscoveRobject)
# Output: A data frame with the complete table from the GeneDiscoveR object.